Subject: Re: Codon usage in A.nidulans

From: [email-masked] (Matthew Sachs)
Date: 17 Apr 1996 09:15:09 -0700

>I am looking for a codon usage table for A.nidulans.  Does anyone know
>where I >can find one?

Codon preferences tables for Aspergilli and many other organisms (5155
organisms; 485 organisms with tables calculated from 20 or more CDSs listed
4/16/96) can be found at:

http://www.dna.affrc.go.jp/~nakamura/

For A. nidulans, use the current name, Emericella nidulans!

This site also has data concerning organellar and viral codon usage.

Further description of this work:

Nakamura, Y., Wada, K., Wada, Y., Doi, H., Kanaya, S., Gojobori, T., and
Ikemura, T. (1996). Codon usage tabulated from the international DNA
sequence
databases. Nucl. Acids Res. 24, 214-215.

-----------------------------------------------------------
Matthew Sachs
Department of Chemistry, Biochemistry and Molecular Biology
Oregon Graduate Institute of Science and Technology
20000 NW Walker Road
P.O. Box 91000
Portland, OR  97291-1000
503 690-1487 Phone
503 690-1464 Fax
[email-masked]